nondefaced_detector.preprocessing.conform.conform_data

conform_data(in_file, out_file=None, out_size=(256, 256, 256), out_zooms=(1.0, 1.0, 1.0), order=3)[source]

Conform the input dataset to the canonical orientation.

Parameters

  • in_file (str - Path) – Path to the input MRI volume to conform.

  • out_file (str - Path, default=None) – Path to save the conformed volume. By default the volume is saved as /tmp/conformed.nii.gz

  • out_size (tuple of size 3, optional, default=(256, 256, 256)) – The shape to conform the 3D volume to.

  • out_zooms (tuple of size 3, optional, default=(1.0, 1.0, 1.0)) – Factors to normalize voxel size to.

  • order (int, optional, default=3) – Order of the spline interpolation. The order has to be in the range 0-5.

Returns

The path to where the conformed volume is saved.

Return type

str - Path